*********************************************************************
*** do setups
*********************************************************************
setup D0RunII p14.d0raw2sim.00 (or, whatever version your are testing)
setup d0cvs
setup mc_runjob


*********************************************************************
*** setup directory structure
*********************************************************************
create a working directory
newrel -t p14.d0raw2sim.00 my_dir
cd to it (cd my_dir)
d0setwa
addpkg recocert p14-br
gmake all >& junk.txt &


********************************************************************
****  do "Path1"
********************************************************************

**********************
* get the macro
*********************
cp /home/sceno/mccertification/d0raw2sim_data.copyfiles .
cp /home/sceno/mccertification/do_reco_data .

**********************
* run some zero bias events through reco
***********************
mc_jobscript -clued0 -jobname=reco -macro=do_reco_data
-copyobjects=d0raw2sim_data.copyfiles
cluesow -l cput=61:00:00 -l mem=1000mb reco.sh



********************************************************************
****  do "Path2"
********************************************************************

***********************
*** get the macros
***********************

cp /home/sceno/mccertification/make_d0raw2sim_data_2 . 
cp /home/sceno/mccertification/d0raw2sim_data.copyfiles .
cp /home/sceno/mccertification/all_d0raw2sim_overlay .

**********************
** process some zero bias events through d0raw2sim
*********************
mc_jobscript -clued0 -jobname=d0raw2sim -macro=make_d0raw2sim_data_2
-copyobjects=d0raw2sim_data.copyfiles
cluesow -l cput=11:00:00 -l mem=512mb d0raw2sim.sh

wait for this job to finish

go to the area containing the output and delete the file whose
name starts import...

********************
*** point the all_... macro to the output from this job
*******************

in all_d0raw2sim_overlay, change the line
   cfg d0sim define string MinBiDir  /work/...
to point to the output of the previous step.
it should have a name like
   /work/cole-clued0/eno/d0raw2sim/haha/d0raw2sim/r2s-dest/raw2sim/


******************
***  make the signal sample, and overlayed with d0raw2sim output
*****************

mc_jobscript -clued0 -jobname=fullchain -macro=all_d0raw2sim_overlay
cluesow -l cput=61:00:00 -l mem=1000mb fullchain.sh


********************************************************************
****  Overlay the plots from the 2 paths
********************************************************************

cd recocert/rcp

*****************
* process the path1 data
*****************

the output from path 1 will have a name like
/work/cole-clued0/eno/d0raw2sim/haha/reco/data-dest/d0reco/
d0reco_p14.d0raw2sim.00_NumEv-2000_dzero_clued0_03300154456


make a softlink to this, with the name inputfile
ln -s /work/cole-clued0/eno/d0raw2sim/haha/reco/data-dest/d0reco/d0reco_p14.d0raw2sim.00_NumEv-2000_dzero_clued0_03300154456 inputfile

../../bin/$BFARCH/RecoCert_x -rcp runD0ChunkAnalyze_DST.rcp

rename the output file

mv RecoCert.root path1.root

*****************
* process the path2 data
*****************

the output from path 2 will have a name like
/work/cole-clued0/eno/d0raw2sim/p14d0raw2sim00/fullchain/d0g-dest/d0reco/
d0reco_p14.d0raw2sim.00_NumEv-0_dzero_clued0_03300101546


make a softlink to this, with the name inputfile
ln -s inputfile

../../bin/$BFARCH/RecoCert_x -rcp runD0ChunkAnalyze_DST.rcp

rename the output file

mv RecoCert.root path2.root

*********************
* overlay the output
************************

../../bin/$BFARCH/OverlayPlots path1.root path2.root



the result is recocert.ps